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  • convert fgenesh output into gff3 file

    Hello everyone, im a newbie..
    I've performed gene prediction using FGENESH (in molquest) on my ~10000 contigs. Ive imported my contigs in batch and the output files that ive got in a form of txt files containing the information of predicted gene (of all contigs) in a single file(as attached). How am i going to split those information into separate file or how am i going to convert it to gff3 file. There are too many contigs so theres no way im gonna do it manually
    Attached Files

  • #2
    Hi,

    Maybe:

    Tab -> Genbank -> GFF3

    Look there:

    Genbank -> GFF3

    GFF Toolkit (v0.1) http://galaxy.raetschlab.org/

    Tab -> Genbank

    converter http://sequenceconversion.bugaco.com...ogy/sequences/

    molbiol-tools.ca http://molbiol-tools.ca/Convert.htm

    -------------------------

    Bernardo
    Last edited by bernardo_bello; 01-07-2013, 09:20 AM.

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    • #3
      Hi
      I am looking an answer for the same question..or similar question. I am looking for a script or tool which can parse the fgenesh result from mutiple sequences run and give the output as gff3 or the sequences of predicted proteins.

      Thank you in advance

      Comment

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